"A meek endeavor to the triumph" by Sampath Jayarathna
Showing posts with label research. Show all posts
Showing posts with label research. Show all posts

Wednesday, April 23, 2014

Quick and easy way to write a research paper publication

First prepare the figures.
Be sure that everything has been done n=3 or more, and be sure to do the statistical analysis (t-tests to compare 2 things that have roughly Gaussian distributions, Mann-Whitney otherwise; use ANOVA if there are three or more things you’re comparing). Something is different if p < 0.05, otherwise its not a statistically significant difference. And remember to put size bars on all the micrographs.


Then sit down with each figure and write a results paragraph for it
Results section – you can write a new paragraph every 5 minutes.  If you have writer’s block, sit down with the figures, and have someone take dictation as you answer the following questions for each figure.
The following set of sentences allows one to easily create a typical results paragraph:

  • what we wanted to find out
    “To determine if extracellular cAMP regulates.......”
  • what has been done before
    “We previously observed that ...”  (these first 2 sentences can be swapped) 
  • how we did the experiment (don’t give details, as these are in the Methods)
    “Control and xyzA cells were starved for six hours and cAMP was added....” 
  • what we saw, starting with a connection between the control and what has been done previously (if applicable)
    “As previously observed, wild-type cells showed a significant decrease in …” 
  • and then compare the mutant or treatment to the control
    “Unlike control cells, the xyzA cells showed no cAMP-induced....”
    or
    “Compared to the control, cAMP caused a significant increase in …” 
  • what this means
    “The data suggest that XyzA is required for ....”
Congrats, you’ve done a paragraph for your first figure!  Now repeat for all the other figures.

Then for each figure do a methods section. 
Pretend you are writing a lab protocol for someone – list exact composition/ concentration, volume, time, temperature if not room temp to do that experiment.  If there is a published paper that has the procedure in it, or you did something following the manufacturer’s directions, just reference the paper or write “..was done following the manufacturer’s directions.” 

The introduction will now be easy to write.
Print out the Results and Methods sections.  Get a red pen and circle all the big words or unusual techniques, and write a simple explanation for someone not in the field.
So for a paper showing that filamin is required for normal circadian rhythms in Dictyostelium, I’d write 3 paragraphs, adding references for pretty much each sentence or statement
  • what’s known about Dictyostelium
  • what’s known about circadian rhythms, and what’s known about them in Dicty
  • what’s known about filamin in general, and what’s known about its function in circadian rhythms and in Dicty
Depending on how things sound, you can swap the paragraphs around; start with the broadest/ most important topic and narrow things down.  So maybe you could start with circadian rhythms, then Dicty, then circad rhythms in dicty, and then filamin.

The Discussion is also easy.
Gather the ‘What this means sentences from the Results and glop them together for the first Discussion paragraph. 
  • “In this report, we have shown that ……”
  • Now start going through that first paragraph of the Discussion, connecting each of the sentences to other things in the literature
At some point do the figure legends, and you’re pretty much done!

This is an extract from Professor Richard Gomer's how to write a paper. 

Wednesday, February 25, 2009

I'm on Texas State CS department research spotlight - First South Asian graduate student on main page............

I'm humbly proud of myself getting into the CS department main page research spotlight. My heartiest thanks goes to my lovely wife Nim for her encouragements and my supervisor Dr. Komogortsev for writing and posting my achievements to the web, and writing a superb recommendation letter for the grant proposal. Also, Dr Denise from the Department of Physical Therapy for her help on editing (specially trimming it to 500 words, the most difficult part) and recommending my proposal for the Sigma Xi award. Finally Texas State CS department web team for posting it with most appropriate picture of me...thanks everbody..............

Here's the link for the CS department web site: http://www.cs.txstate.edu/
Read more about my achievements here at my personal web: Web Maze

Monday, December 15, 2008

Sigma Xi research grant award: I got it yehhhh....

Recently I won the Sigma Xi Scientific Research Society Grant in aid research grant for my proposal on "Human Oculomotor Plant Modeling: Is there a significant change or deficit in oculomotor function of mTBI patients compared to normal vision in healthy subjects? ". This is the first time a student from the Texas State CS department won this prestige and competitive research award.

The Sigma Xi Grants-in-Aid of Research (GIAR) program has been providing undergraduate and graduate students with valuable educational experiences for more than 80 years. By encouraging close working relationships between students and faculty, the program promotes scientific excellence and achievement through hands-on learning.

The program awards grants of up to $1,000 to students from all areas of the sciences and engineering. Designated funds from the National Academy of Sciences allow for grants of up to $5,000 for astronomy research and $2,500 for vision related research. Students use the funding to pay for travel expenses to and from a research site, or for purchase of non-standard laboratory equipment necessary to complete a specific research project.

A quote from Bowling Green State University Sigma Xi grant recipients page.

"These students show particular promise in their research careers," said Dr. Paul Moore, a professor of biological sciences at BGSU. "This grant is a stamp of approval that they are doing good research," he added, noting that "the list of excellent scientists who got their start with Sigma Xi grants includes Nobel Prize winners and some of the top scientists over the past century."

The Grants-In-Aid of Research program is the oldest of its kind, providing undergraduate and graduate students with educational experiences since 1922. The program promotes scientific excellence through hands-on learning and close working relationships between students and faculty. "